Instructor Notes

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What is OMOP?

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Instructor Note

Make sure everyone - has R open - has a project - has managed to download the data

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Instructor Note

Check that everyone knows what FAIR stands for

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Instructor Note

I have used read.csv because using the more up to date package caused issues with types, which I would have gone into if it hadn’t then caused issues with joining and I ran out of time

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Why OMOP?

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concepts and conditions

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measurements and observations

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Instructor Note

some first example data we could use from new MeasurementDiagnostics package likely replace this with other the dplyr code should work on this too https://github.com/SAFEHR-data/omopcat/blob/main/data-raw/test_db/dummy/measurement.csv

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Visits

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Medications

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Community provided software for working with OMOP data

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Placeholder Chapter 8

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Instructor Note

Inline instructor notes can help inform instructors of timing challenges associated with the lessons. They appear in the “Instructor View”

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